Signs of inflammatory edema 11 days post immunisation (dpi) coincided with IRL thickening, while neuro-axonal degeneration throughout the disease course contributed to IRL thinning observed after 20 dpi. Early retinal pathology, including axonal transport impairment, was observed prior to cellular infiltration (i.e. T-cells) in the optic nerve 11 dpi. However, the consequences of early retinal damage on OCT-derived measurements were offset by the initial inflammatory edema. Microgliosis and astrocytosis was detected in the retina prior to optic neuritis and persisted until 33 dpi. Müller cell reactivity (i.e. aquaporin-4 and glutamine synthetase decrease) occurred after 11 dpi in the IRL. Severe neuro-axonal degeneration was observed in the optic nerve and retina until 33 dpi.