Seventy patients with syncope and 105 patients with epilepsy were included in the analysis. The duration of loss of consciousness (LOC), neuron-specific enolase (NSE), prolactin, NH3, CPK, and myoglobin level were measured within 6 hours after the symptom onset. Univariate analysis was carried out to identify the value of each demographic and the measured parameter for differentiation of epileptic seizure from syncope using a logistic regression. Multivariate analyses controlling for age and sex were conducted to identify the possible independent biomarkers. Machine learning algorithms, including support vector machine, decision tree, K-nearest neighbor, and random forest classifiers were applied to develop an algorithm for differential diagnosis.