Twenty-two patients were diagnosed with MS within 2 years and 22 remained as CIS. Neuroinflammation reflected by lesions on MRI and oligoclonal IgG bands (OB) in cerebrospinal fluid (CSF) was more prominent in MS compared to CIS. Decreased GCIPL thickness, BPV, MYV, BPF and MYF were seen in MS compared to CIS . Inflammatory metabolite mins concentration was higher in MS than CIS. Longitudinal study showed consistency of decreased GCIPL in MS compared to CIS (p<0.01). RNFL showed marginal changes over time in MS. GCIPL correlated positively with BPV and MYV (p<0.05), but negatively with mins (p<0.05).