A 10 years old boy presented with right lower limb dystonia since he was 1 year old. Symptom is better in the morning and worse with activity. He also had bilateral ptosis and waddling gait which are worse when fatigued. Investigations including anti-acetylcholine receptor antibody, metabolic profile, electrophysiological study and magnetic resonance of the brain was negative. Chromosomal microarray showed 16p13.3 duplication, paternally inherited with unknown significance. He was initially started on Levodopa without improvement of dystonia. Whole exome sequencing showed two heterozygous mutations (c.1669G>A, p. Ala557Thr, maternal, pathogenic; c938_939delT, p.phe313Cysfs*7, likely pathogenic, paternal) in the CHAT gene associated autosomal recessive congenital myasthenia. Patient report significant improvement after starting Pyridostigmine.