Two female T21 patients were included with onset of autism, cognitive decline, insomnia, and psychosis at 12 (P1) and 16 (P2) years of age. Catatonia was present in one patient (P1). Diagnostic work-up was pertinent for anti-thyroid antibody-seropositivity in both cases (anti-microsomal and anti-thyroid peroxidase) and positive oligoclonal bands in one patient (P2). Otherwise, MRI, EEG, CSF and comprehensive serum/CSF AE antibody panels were negative. Both patients were treated with intravenous corticosteroids, intravenous immunoglobulins, and additional immunosuppressive agents (azathioprine [P2]; plasmapheresis, rituximab, cyclophosphamide [P1]). Earlier initiation of immunotherapy (9 months after symptom onset) was associated with partial sustained improvement (P2) while later initiation of immunotherapy (12 months after symptom onset) was associated with partial but non-sustained improvement (P1).