AI models demonstrated exceptional diagnostic accuracy for specific NDDs. For Alzheimer’s disease, a deep learning model (DL) achieved an area under the curve (AUC) of 0.9978, with models leveraging biomarkers such as retinal vascular attenuation (reduced fractal dimension, vessel density) and inner retinal layer thinning, which correlated with cerebrospinal fluid Aβ42/Aβ40 ratios and cognitive scores. In Parkinson’s disease, AI identified thinning of the inner nuclear and outer plexiform layers as important features, with a top model achieving an AUC of 0.918. DL (convolutional neural networks and transformers) was the predominant technique, outperforming classical machine learning.