While patient-derived anti-LRR antibodies bound the native LRR-Fc-fusion in ELISA, the effects of the same antibodies were not neutralized by the construct in neuron-based immunofluorescence inhibition tests. The immunofluorescence assays also revealed binding of the LRR-Fc-fusion to the neurons, both independent of and colocalized with anti-LRR autoantibodies. As a strategy to prevent this interaction, the amino acids of the LRR domain involved in LGI1-LGI1 dimerization were mutated, resulting in new LRR-Fc-fusion variants. Although most amino acid substitutions decreased autoantibody binding, two LRR-Fc-fusion variants showed increased binding signals in ELISA for different patient-derived autoantibodies. These two variants showed neutralization capabilities in neuron-based immunofluorescence assays but were still localized at the neurons. However, this neuronal binding showed no pathological effects in electrophysiological analysis. The two engineered LRR-Fc-fusion variants effectively neutralized the increased neuronal excitability caused by patient-derived antibodies.